PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048289-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 120aa    MW: 13557.4 Da    PI: 10.434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048289-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-087331948
                      TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                      lG++ W++Ia  ++ +Rt+ ++k++w++++
  PSME_00048289-RA  7 LGNK-WSLIAGLLP-RRTD-EIKNHWNTHM 33
                      8999.*********.****.*******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.325137IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-10747IPR009057Homeodomain-like
PfamPF002491.6E-5732IPR001005SANT/Myb domain
SuperFamilySSF466892.2E-6746IPR009057Homeodomain-like
CDDcd001674.21E-4933No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSRSSSLGNK WSLIAGLLPR RTDEIKNHWN THMKKKLVRR GFEPQSHIPL SQANNSNTTC  60
TSVSVAKHGI PEPADVFEYD RSESSPKQLV VCKAEEHPEL SKKFLKSYHR NFKNIAAASV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131856.12e-18uncharacterized protein LOC100193234
RefseqXP_012462415.13e-18PREDICTED: transcription repressor MYB6-like
TrEMBLB1PPT91e-35B1PPT9_PINPS; R2R3-Myb14 transcription factor (Fragment)
STRINGGRMZM2G160838_P018e-18(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-18myb domain protein 5